PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015879458.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ZF-HD
Protein Properties Length: 347aa    MW: 37893.2 Da    PI: 7.4589
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015879458.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.44.8e-3562119359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                      v+YkeC+kNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre+ee
  XP_015879458.1  62 VVTYKECQKNHAASLGGHALDGCGEFMPSPTATqTDPTSLKCAACGCHRNFHRREPEE 119
                     589***************************99989*******************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.4E-2963117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-2363115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-3264116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.08465116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.21E-18204275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-29206276IPR009057Homeodomain-like
TIGRFAMsTIGR015651.7E-24214271IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDITPTVTTT TNNTASTKSP EADSETPTRI QPAKPLAFSN GILKRHNPHH HHHHHLPNTP  60
VVVTYKECQK NHAASLGGHA LDGCGEFMPS PTATQTDPTS LKCAACGCHR NFHRREPEEP  120
LPPPANTTHV IEYQPHHRHH PPPPPPPHAG NRSPNSSSPP PISSSYYPSA PHMLLALSTG  180
LSGPQHQDNA GGGGIGVTNT GMVTPGSGGR QSTRKRFRTK FSQDQKERMH QFAERVGWKM  240
QKRDEEIVQE FCNEIGVEKG TLKVWMHNNK NTFGKKDVNG TGSTGRNVVE QIHNNGSNND  300
KNENTNNNSE NNDDDDDNNN NSQSPNHNYQ DDHGVAHVAT NGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-202132721675ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879458.10.0PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ9LXG08e-79ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLB9H0F61e-101B9H0F6_POPTR; Uncharacterized protein
STRINGPOPTR_0004s12500.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-70homeobox protein 34